Prediction of mitochondrial proteins of malaria parasite
... protein provides more information than composition of whole protein (Kumar et al. 2006). Based on this observation, methods have been developed using split amino acid composition (Verma et al. 2008). In SAAC, first sequence is divided in parts then composition of each part is computed separately and ...
... protein provides more information than composition of whole protein (Kumar et al. 2006). Based on this observation, methods have been developed using split amino acid composition (Verma et al. 2008). In SAAC, first sequence is divided in parts then composition of each part is computed separately and ...
Amino Acid Sequences and Evolutionary Relationships - Parkway C-2
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Control of human β-globin mRNA stability and its impact on beta
... Human α- and b-globin genes descend from a common ancestral gene, share general and specific structural features, and both encode extraordinarily stable mRNAs in erythroid cells, which allow co-expression of α- and bglobin proteins to reach high levels. Human globin gene expression is a highly regul ...
... Human α- and b-globin genes descend from a common ancestral gene, share general and specific structural features, and both encode extraordinarily stable mRNAs in erythroid cells, which allow co-expression of α- and bglobin proteins to reach high levels. Human globin gene expression is a highly regul ...
paper describing HSSP
... values for single residues, pairs of residues, short oligopeptides or short sequence patterns. Both kinds of methods are severely limited by the size of the database in which one performs searches or from which one derives structural preferences. For example, in order to have on the average 5 occurr ...
... values for single residues, pairs of residues, short oligopeptides or short sequence patterns. Both kinds of methods are severely limited by the size of the database in which one performs searches or from which one derives structural preferences. For example, in order to have on the average 5 occurr ...
Distortion of quantitative genomic and expression
... ABL1AluMER1 (Table 1, reactions 21 and 22). Synthetic repetitive DNA. Synthetic repetitive DNA was prepared from genomic regions selected based on the families of repetitive sequences contained within them, since each is enriched in the Cot-1 manufacturing process. However, any representative genomi ...
... ABL1AluMER1 (Table 1, reactions 21 and 22). Synthetic repetitive DNA. Synthetic repetitive DNA was prepared from genomic regions selected based on the families of repetitive sequences contained within them, since each is enriched in the Cot-1 manufacturing process. However, any representative genomi ...
me-6 - Genetics
... in crosses between alleles was not usually the result of reversion. me-7: The data from crosses between me-7 alleles are presented in Table 2. Many crosses between me-7 alleles show pronounced asymmetries between the two classes of methionine prototrophs with parental combinations of flanking marker ...
... in crosses between alleles was not usually the result of reversion. me-7: The data from crosses between me-7 alleles are presented in Table 2. Many crosses between me-7 alleles show pronounced asymmetries between the two classes of methionine prototrophs with parental combinations of flanking marker ...
Genetics of Colorectal Cancer - Scioto County Medical Society
... location in colon, age, gender, and race Generally performed by RCT’s in patients with prior colorectal CA followed for recurrence of adenomas Diet, fiber, and antioxidant vitamins have not been shown by RCT’s to decrease risk of recurrent adenomas COX-2i’s and Sulindac have been shown to reduce t ...
... location in colon, age, gender, and race Generally performed by RCT’s in patients with prior colorectal CA followed for recurrence of adenomas Diet, fiber, and antioxidant vitamins have not been shown by RCT’s to decrease risk of recurrent adenomas COX-2i’s and Sulindac have been shown to reduce t ...
Chapter 1
... • When glycolysis and b-oxidation occur at the same rate there is a steady supply of pyruvate to convert to oxaloacetate • If the supply of oxaloacetate is too low to allow all the acetyl CoA to enter the citric acid cycle: – Convert excess acetyl CoA to ketone bodies b-hydroxybutyrate • Acetone • A ...
... • When glycolysis and b-oxidation occur at the same rate there is a steady supply of pyruvate to convert to oxaloacetate • If the supply of oxaloacetate is too low to allow all the acetyl CoA to enter the citric acid cycle: – Convert excess acetyl CoA to ketone bodies b-hydroxybutyrate • Acetone • A ...
Full genome comparison and characterization of avian H10 viruses
... from a flock of sick chickens with nephropathy and visceral gout [3]. Several studies indicate that the receptor specificity of haemagglutinin plays an important role for tissue tropism and the host range of the influenza virus [19]. The amino acid composition of the receptor binding pocket of the H ...
... from a flock of sick chickens with nephropathy and visceral gout [3]. Several studies indicate that the receptor specificity of haemagglutinin plays an important role for tissue tropism and the host range of the influenza virus [19]. The amino acid composition of the receptor binding pocket of the H ...
Bio CET 2015 Key Answers
... Solution : Variable number of tandem repeats are the loci for DNA fingerprinting techniques, Introns and Exons are spliced to form a processed eukaryotic mRNA, Dystrophin is the largest gene measuring up to 2.4 Mb the Satellite DNA contains repeats that bulk the DNA content. Smack and Crack are prod ...
... Solution : Variable number of tandem repeats are the loci for DNA fingerprinting techniques, Introns and Exons are spliced to form a processed eukaryotic mRNA, Dystrophin is the largest gene measuring up to 2.4 Mb the Satellite DNA contains repeats that bulk the DNA content. Smack and Crack are prod ...
Title A Fluorescently Labeled, Hyperbranched Polymer
... (termed NC-target) to the duplex solution resulted in a higher signal intensity (Fig. S6†). Even though this method can be used to ...
... (termed NC-target) to the duplex solution resulted in a higher signal intensity (Fig. S6†). Even though this method can be used to ...
BCH364C-391L-Spring2015-SequenceAlignmentI
... In practice, searching for sequence or structural similarity is one of the most powerful computational approaches for discovering functions for genes, since we can often glean many new insights about a protein based on what is known about its homologs. Here’s an example from my own lab, where we di ...
... In practice, searching for sequence or structural similarity is one of the most powerful computational approaches for discovering functions for genes, since we can often glean many new insights about a protein based on what is known about its homologs. Here’s an example from my own lab, where we di ...
manualE6901
... pTXB1 (NEB #N6707) contains a mini-intein from the Mycobacterium xenopi gyrA gene (Mxe GyrA intein; 198 amino acid residues) that has been modified to undergo thiol-induced cleavage at its N-terminus (3,5). The vector allows for the purification of a target protein without any extra amino acids by c ...
... pTXB1 (NEB #N6707) contains a mini-intein from the Mycobacterium xenopi gyrA gene (Mxe GyrA intein; 198 amino acid residues) that has been modified to undergo thiol-induced cleavage at its N-terminus (3,5). The vector allows for the purification of a target protein without any extra amino acids by c ...
Topological studies suggest that the pathway of the protons through
... occupy identical or juxtaposed positions. These findings are even more remarkable since labeling occurs in segments which are not homologous. These results suggest that both proteins have very similar secondary structures and environments. ...
... occupy identical or juxtaposed positions. These findings are even more remarkable since labeling occurs in segments which are not homologous. These results suggest that both proteins have very similar secondary structures and environments. ...
Peer-reviewed Article PDF
... palindromic repeats (CRISPRs) are DNA loci that contain multiple, short, direct repetitions of base sequences which are inherited as a result of previous infections. After expression, RNA-guided geneediting platform makes a small strand of RNA that interacts with invasive DNA. Cas genes code for pro ...
... palindromic repeats (CRISPRs) are DNA loci that contain multiple, short, direct repetitions of base sequences which are inherited as a result of previous infections. After expression, RNA-guided geneediting platform makes a small strand of RNA that interacts with invasive DNA. Cas genes code for pro ...
the purine-pyrimidine classification scheme reveals new
... upper left block with Pro (P), Ser (S), Ala (A) and Thr (T). Each block shows the same arrow pattern. All strongly evolutionary conserved groups of amino acids (Thompson et al., 1994) are subsets of exactly one codon - reverse codon group, e.g. the MILV amino acids belong to the upper right block in ...
... upper left block with Pro (P), Ser (S), Ala (A) and Thr (T). Each block shows the same arrow pattern. All strongly evolutionary conserved groups of amino acids (Thompson et al., 1994) are subsets of exactly one codon - reverse codon group, e.g. the MILV amino acids belong to the upper right block in ...
Technique ChIC and ChEC: Genomic Mapping of Chromatin Proteins
... The ChIC method (chromatin immunocleavage) consists of tethering a fusion protein (pA-MN) consisting of micrococcal nuclease (MN) and staphylococcal protein A to specifically bound antibodies. The nuclease is kept inactive during the tethering process (no Ca2ⴙ). The ChEC method (chromatin endogenous ...
... The ChIC method (chromatin immunocleavage) consists of tethering a fusion protein (pA-MN) consisting of micrococcal nuclease (MN) and staphylococcal protein A to specifically bound antibodies. The nuclease is kept inactive during the tethering process (no Ca2ⴙ). The ChEC method (chromatin endogenous ...
Fig. 1 - Repositorio Académico
... Dtg was controlled by Dpp and characterized a 524-bp enhancer that mediated expression in the dorsal midline, as well as, in the differentiated amnioserosa in transgenic reporter embryos. This enhancer contained a highly conserved region of 48-bp in which bioinformatic predictions and in vitro assay ...
... Dtg was controlled by Dpp and characterized a 524-bp enhancer that mediated expression in the dorsal midline, as well as, in the differentiated amnioserosa in transgenic reporter embryos. This enhancer contained a highly conserved region of 48-bp in which bioinformatic predictions and in vitro assay ...
Molecular Plant-Microbio Interactions
... the Tn5lacZ is inserted between two ORFs that are transcribed in the same direction (Fig. 1). The first ORF shows 76% identity and 86% similarity at the amino acid level with the bioA homolog of Pseudomonas aeruginosa PAO1 (Stover et al. 2000) coding for an aminotransferase. Because the Tn5lacZ is i ...
... the Tn5lacZ is inserted between two ORFs that are transcribed in the same direction (Fig. 1). The first ORF shows 76% identity and 86% similarity at the amino acid level with the bioA homolog of Pseudomonas aeruginosa PAO1 (Stover et al. 2000) coding for an aminotransferase. Because the Tn5lacZ is i ...
Gluconacetobacter entanii sp. nov., isolated from submerged high
... or meat fermentation, for example. When vinegar fermentations have to be started or a breakdown of a fermentation process requires the restart of an acetator, a microbiologically undefined inoculum is commonly used (Sokollek & Hammes, 1997). The lack of defined pure starter cultures is due to proble ...
... or meat fermentation, for example. When vinegar fermentations have to be started or a breakdown of a fermentation process requires the restart of an acetator, a microbiologically undefined inoculum is commonly used (Sokollek & Hammes, 1997). The lack of defined pure starter cultures is due to proble ...
Amino acid metabolism II. Urea cycle
... N-acetylglutamate synthase deficiency: • Deficiency or genetic mutation of enzyme (AR) → urea cycle failure. • A severe neonatal disorder with fatal consequences, if not detected immediately upon birth. • Hyperammonemia and general hyperaminoacidemia in a newborn (liver contain no detectable abilit ...
... N-acetylglutamate synthase deficiency: • Deficiency or genetic mutation of enzyme (AR) → urea cycle failure. • A severe neonatal disorder with fatal consequences, if not detected immediately upon birth. • Hyperammonemia and general hyperaminoacidemia in a newborn (liver contain no detectable abilit ...
Relationship between codon biased genes, microarray expression
... fluorescence measurements for each gene were used to estimate the relative mRNA transcript levels. Fluorescence was detected for 1513 homologues of R6 and TIGR4. Given the median (1675 FU, fluorescence units) of the fluorescence distribution, and the proportion (12?56 %, 190 of 1513) of genes with v ...
... fluorescence measurements for each gene were used to estimate the relative mRNA transcript levels. Fluorescence was detected for 1513 homologues of R6 and TIGR4. Given the median (1675 FU, fluorescence units) of the fluorescence distribution, and the proportion (12?56 %, 190 of 1513) of genes with v ...
KARNATAKA COMMON ENTRANCE TEST – MAY, 2016 BIOLOGY
... (1) a and c only (2) a and b only (3) b only (4) b and c only Ans (2) 49. Offsprings formed during sexual reproduction exhibits more variation than, those formed asexual method, because, (1) sexual reproduction is more complicated (2) genetic material comes from two different individuals (3) genetic ...
... (1) a and c only (2) a and b only (3) b only (4) b and c only Ans (2) 49. Offsprings formed during sexual reproduction exhibits more variation than, those formed asexual method, because, (1) sexual reproduction is more complicated (2) genetic material comes from two different individuals (3) genetic ...
Scoring Alignments and Local Sequence Alignment
... • Some of these mutations have little effect on the organism’s function, therefore some penalties, δ(vi , wj), will be less harsh than others. ...
... • Some of these mutations have little effect on the organism’s function, therefore some penalties, δ(vi , wj), will be less harsh than others. ...
Antioxidant activities of dithiol alpha
... ions that prevent them from generating free radicals8. Due to its chelating ...
... ions that prevent them from generating free radicals8. Due to its chelating ...
Point mutation
A point mutation, or single base modification, is a type of mutation that causes a single nucleotide base change, insertion, or deletion of the genetic material, DNA or RNA. The term frameshift mutation indicates the addition or deletion of a base pair. A point mutant is an individual that is affected by a point mutation.Repeat induced point mutations are recurring point mutations, discussed below.