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Chapter 16 1. Explain why researchers originally thought protein was the genetic material. Researches originally though that protein was the genetic material because they are the links between genotype and phenotype. 2. Summarize experiments performed by the following scientists, which provided evidence that DNA is the genetic material: a. Frederick Griffith- found the first evidence that genes are specific molecules and he experimented with mice b. Alfred Hershey and Martha Chase – demonstrated that it was DNA, not protein that functioned as the phages’ genetic material by experimenting with bacteria. c. Erwin Chargaff – analyzed the base composition of DNA from a number of different organisms. 3. List the three components of a nucleotide. Sugar component, selection of nitrogenous bases, and order 4. Distinguish between deoxyribose and ribose. Deoxyribose – the sugar component of DNA Ribose – the sugar component of RNA 5. List the nitrogen bases found in DNA, and distinguish between pyrimidine and purine. Adenine, Guanine, Cytosine, and Tymine Pyrimidine – single ring Purine – various rings 6. Explain how Watson and Crick deduced the structure of DNA, and describe what evidence they used. They deduced that DNA was a double-helix; they built models that confirmed xray data 7. Explain the "base-pairing rule" and describe its significance. A specific base goes with another specific base in the opposing strand. This gives uniformity to the DNA molecule. 8. Describe the structure of DNA, and explain what kind of chemical bond connects the nucleotides of each strand and what type of bond holds the two strands together. DNA is structured like a double-helix with sugar-phosphate backbones and inner nitrogenous bases. The nitrogenous bases are connected with hydrogen bonds and held together with the same bond. 9. Explain, in their own words, semi conservative replication, and describe the MeselsonStahl experiment. The two strands of the parental molecule separate, and each functions as a template for synthesis of a new complementary strand. The experiment was using the culturing of bacteria. 10. Describe the process of DNA replication, and explain the role of helicase, single strand binding protein, DNA polymerase, ligase, and primase. DNA replication involves separating the DNA molecule into two strands. Helicase – unwinds the DNA helix forming a Y-shaped replication fork. Single stranded DNA binding protein – attach each strand of the uncoiled DNA to keep them separate DNA polymerase – moves in the 3’ 5’ direction along each template strand. Ligase – produce a single compliment strand Primase – initiates each complementary segment with RNA nucleotides. 11. Explain what energy source drives endergonic synthesis of DNA. The energy source that drives this is two additional phosphates. 12. Define ant parallel, and explain why continuous synthesis of both DNA strands is not possible. The sugar phosphates are upside-down to each other. 13. Distinguish between the leading strand and the lagging strand. Leading strand – assembled continuously as the double-helix uncoils Lagging strand – is assembled in short fragment and therefore takes longer 14. Explain how the lagging strand is synthesized when DNA polymerase can add nucleotides only to the 3¢ end. It is synthesized in compartments and takes much longer 15. Explain the role of DNA polymerase, ligase, and repair enzymes in DNA proofreading and repair Leading strand is synthesized by DNA polymerase, and repair enzymes correct errors in the DNA replication Chapter 17 1. Explain how RNA differs from DNA. They have different nitrogenous bases 2. In your own words, briefly explain how information flows from gene to protein. It interconnects with the information in the gene and sends out to each protein 3. Distinguish between transcription and translation. Transcription – RNA molecules are created by using the DNA molecule as a template Translation – the processed RNA molecules are used to assemble amino acids into a polypeptide 4. Describe where transcription and translation occur in prokaryotes and in eukaryotes; explain why it is significant that in eukaryotes, transcription and translation are separated in space and time. In prokaryotic cells transcription and translation occurs inside the cell, but since there is no nucleus they occur in open space. In eukaryotic cells transcription occurs inside the nucleus while translation occurs outside the nucleus. 5. Define codon, and explain what relationship exists between the linear sequence of codons on mRNA and the linear sequence of amino acids in a polypeptide. Codons are a triplet group of three adjacent nucleotides and linear sequences provide for alignment and matching of each 6. List the three stop codons and the one start codon. STOP – UAA, UGA, UAG START – AUG 7. Explain in what way the genetic code is redundant and unmistakable. It may be different combinations but each codon means a specific thing. 8. Explain the evolutionary significance of a nearly universal genetic code. Everyone knows what everything means therefore there is not confusion. 9. Explain the process of transcription including the three major steps of initiation, elongation, and termination. In initiation, the RNA polymerase attaches to promoter regions on the DNA and begins to unzip. Then elongation occurs as the RNA polymerase unzips the DNA and assembles the RNA nucleotides. Finally there is termination which occurs when the RNA polymerase reaches a special sequence of nucleotides that serve as a termination point. 10. Distinguish among mRNA, tRNA, and rRNA. mRNA – (messenger RNA) a single strand of RNA that provides the template used for sequencing amino acids into a polypeptide. tRNA – (transfer RNA) a short RNA molecule that is used for transporting amino acids. rRNA – (ribosomal RNA) molecules that are the building blocks of ribosomes 11. Describe the structure of tRNA and explain how the structure is related to function. tRNA resembles the three leaflets of a clover leaf and creates a “wobble” which allows some tRNA’s to base-pair with more than one kind of codon. 12. Describe the difference between prokaryotic and eukaryotic mRNA. Eukaryotic – carries info specifying amino acid sequences of proteins from DNA to ribosomes. Prokaryotic – the translation can begin almost instantaneously 13. Describe some biological functions of introns and gene splicing. Introns are intervening sequences that are non-coding. Gene splicing is when they are put together. 14. Explain why base-pair insertions or deletions usually have a greater effect than base-pair substitutions. Insertions or deletions completely change a base-pair wile substitution can sometimes have no effect. 15. Describe how mutagenesis can occur. A number of physical and chemical agents called mutagens interact with DNA to cause the mutations. Chapter 18 1. List and describe structural components of viruses. Capsid – nucleic acid surrounded by a protein coat. Envelope – assists in penetrating their hosts 2. Explain why viruses are obligate parasites. They are obligate parasites because they can only survive off of another living thing, as soon as they are brought into the air they die. 3. Explain the role of reverse transcriptase in retroviruses. Reverse transcriptase in retroviruses is an enzyme that is used to make a DNA complement of the retroviruses’ RNA. 4. Describe how viruses recognize host cells. By a “lock and key” fit between proteins on the outside of the virus and specific receptor molecules on the surface of the cell. 5. Distinguish between lytic and lysogenic reproductive cycles using phage T4 and phage l as examples. Lytic – the host cell is killed Lysogenic – the host cell stays alive 6. Explain how viruses may cause disease symptoms, and describe some medical weapons used to fight viral infections. Some viruses cause the infected cells to produce toxins that lead to disease symptoms and a medical weapon used to fight them are vaccines. 7. List some viruses that have been implicated in human cancers, and explain how tumor viruses transform cells. The retrovirus, papovirus, adenovirus, and herpesvirus have been implicated on human cancers. When certain tumor viruses infect animal cells growing in cultures, the cells undergo transformation in a cancerous state. 8. List some characteristics that viruses share with living organisms, and explain why viruses do not fit our usual definition of life. Viruses share characteristics such as DNA, RNA and replication with living organisms, except they do not fit our usual definition of life because viruses need a living organism in order to live off of. 9. Describe the structure of a bacterial chromosome. One double-stranded DNA molecule arranged in a circle 10. List and describe the three natural processes of genetic recombination in bacteria. Conjunction – a process of DNA exchange between bacteria. Transduction – occurs when a new DNA is introduced into bacteria by a virus. Transformation – occurs when bacteria absorb DNA from their surroundings. 11. Explain how the F plasmid controls conjugation in bacteria. The F plasmid contains the genes that enable a bacterium to produce pili. 12. Briefly describe two main strategies cells use to control metabolism. Lac operon and trp operon - lac controls the breakdown of lactose and trp produces enzymes for the synthesis of amino acids. 13. Distinguish between structural and regulatory genes. Regulatory – produces a repressor protein a substance that can prevent gene expression by blocking the action of RNA polymerase. Structural – contain DNA sequences that code for several related enzymes that direct the production of some particular end product.