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PreAP BIOLOGY FALL FINAL EXAM OUTLINE UNIT 1: THE NATURE OF SCIENCE CHAPTER 1: THE SCIENCE OF BIOLOGY Section 1.1: What is Science? - Definition of “Science” - Goal of Science - Scientific Methodology o Observation o Forming a Question  Inferences o Hypothesis o Controlled Experiment  Independent (Manipulated) Variable  Dependent (Responding) Variable  Control Group  Experimental Group o Data Collection  Quantitative Data  Qualitative Data  Equipment  Charts and Graphs  Sources of Error o Drawing Conclusions  Revising Hypothesis Section 1.3: Studying Life - Definition of “Biology” - Characteristics of Living Things o Made Up of Cells o Based on Universal Genetic Code  DNA o Obtain and Use Materials and Energy  Metabolism o Grow and Develop o Reproduce  Asexual  Sexual o Respond to Their Environment  Stimulus and Response o Maintain a Stable Internal Environment  Homeostasis o Change Over Time o  Evolve Laboratory Safety UNIT 2: ECOLOGY CHAPTER 3: THE BIOSPHERE Section 3.1: What is Ecology? - Investigating Our Living Planet o Biosphere o “Ecology” o Ecological Levels of Organization  Individual Organisms  Population  Community  Ecosystem  Biome  Biosphere - Biotic and Abiotic Factors o Biotic Factor o Abiotic Factor Section 3.2: Energy, Producers, and Consumers - Primary Producers o Autotrophs o Primary Producers o Photosynthesis - Consumers o Heterotrophs o Consumers  Carnivores  Herbivores  Omnivores  Scavengers  Decomposers  Detritivores Section 3.3: Energy Flow in Ecosystems - Food Chains and Food Webs o Food Chains o Food Webs  Role of Decomposers - Analyzing Energy and Matter Flow Through Trophic Levels o Trophic Level o Ecological Pyramids  Energy Pyramid  10% Rule  Biomass Pyramid  Biomass  Numbers Pyramid Section 3.4: Cycle of Matter - Recycling in the Biosphere o Biogeochemical Cycles o Biological Processes o Geological Processes o Chemical and Physical Processes o Human Activity - The Water Cycle - Nutrient Cycles o Nutrient o The Carbon Cycle o The Nitrogen Cycle  Nitrogen Fixation  Denitrification CHAPTER 4: ECOSYSTEMS AND COMMUNITIES Section 4.2: Niches and Community Interactions - The Niche o Habitat o Niche  Physical External Factors  Biological External Factors  Resources - Competition o Competitive Exclusion Principle o Dividing Resources - Predation, Herbivory, and Keystone Species o Predator-Prey Relationships o Herbivore-Plant Relationships  Herbivory o Keystone Species - Symbiosis o Mutualism o Parasitism o Commensalism CHAPTER 5: POPULATIONS Section 5.1: How Populations Grow - Describing Populations o Geographic Range o Density  Population Density - Population Growth - - o Birthrate and Death Rate o Immigration and Emigration Exponential Growth o Exponential Growth o Rapidly Reproducing Organisms o Slowly Reproducing Organisms o Organisms in New Environments o Models of Exponential Growth  Exponential Growth Curve Logistic Growth o Phases of Growth  Phase 1: Exponential Growth  Phase 2: Growth Slows Down  Phase 3: Growth Stops o The Logistic Growth Curve o Carrying Capacity Section 5.2: Limits to Growth - Limiting Factors - Density-Dependent Limiting Factors o Competition o Predation o Herbivory o Human Predation o Parasitism o Disease o Stress from Overcrowding - Density-Independent Limiting Factors o “Natural Disasters” o Controlling Introduced Species UNIT 3: BIOCHEMISTRY CHAPTER 2: THE CHEMISTRY OF LIFE Section 2.1: The Nature of Matter - Atoms o Subatomic Particles  Protons  Neutrons  Electrons - Elements and Isotopes o Element - Chemical Compounds o Compound Chemical Bonds o Ionic Bond o Covalent Bond  Molecule Section 2.2: Properties of Water - The Water Molecule o Polarity o Hydrogen Bonding  Cohesion  Adhesion  Heat Capacity - Solutions and Suspensions o Mixture o Solutions  Solute  Solvent - Acids, Bases, and pH o Dissociation of Water  Hydrogen Ions  Hydroxide Ions o pH Scale o Acids o Bases o Buffers Section 2.3: Carbon Compounds - The Chemistry of Carbon o Common Bonding Elements o Covalent Bonds (Single, Double) o Carbon Structures - Biomolecules o Macromolecules o Polymerization (dehydration synthesis) o Hydrolysis  Monomer  Polymer o 4 Biomolecules (Macromolecules)  Carbohydrates  Monosaccharides  Polysaccharides  Lipids  Saturated  Unsaturated  Nucleic Acids  Nucleotides  DNA and RNA  Protein   Structure o Amino Acids (20) o Peptide Bonds o Polypeptides Function o R-Groups Section 2.4: Chemical Reactions and Enzymes - Chemical Reactions o Reactants o Products - Energy in Reactions o Energy Changes o Energy Sources o Activation Energy - Enzymes o Proteins o Catalyst  Lowering Activation Energy o Enzyme Substrate Complex  Active Site  Substrate  Lock-and-Key Fit o Regulation of Enzyme Activity  Temperature  pH  Regulatory Molecules  Competitive Inhibitors  Noncompetitive Inhibitors UNIT 4: CELLULAR BIOLOGY CHAPTER 7: CELL STRUCTURE AND FUNCTION Section 7.1: Life is Cellular - The Discovery of the Cell o Early Microscopes o The Cell Theory - Prokaryotes and Eukaryotes o Cell Size o Cell Membrane (Plasma Membrane) o Prokaryotes  No Membrane-Bound Nucleus  Smaller  Unicellular  “Bacteria” o Eukaryotes     True Nucleus Larger and More Complex Unicellular and Multicellular Organisms Protists, Fungus, Plants, and Animals Section 7.2: Cell Structure - Cell Organization o Cytoplasm o Organelles o Nucleus  Nuclear Envelope  Nuclear Pores  Chromosomes  DNA - Organelles that Store, Clean Up, and Support o Vacuoles  Central Vacuole  Contractile Vacuole  Vesicles o Lysosomes o Cytoskeleton - Organelles that Build Proteins o Ribosomes  Protein Synthesis o Endoplasmic Reticulum  Rough ER  Smooth ER o Golgi Apparatus - Organelles that Capture and Release Energy o Chloroplasts o Mitochondria - Cellular Boundaries o Cell Wall o Cell Membrane  Lipid Bilayer  Hydrophobic (Tails)  Hydrophilic (Heads)  Fluid Mosaic Model  Selectively Permeable Section 7.3: Cell Transport - Passive Transport o Diffusion o Concentration Gradient o Facilitated Diffusion  Carrier/ Channel Proteins o Osmosis  Aquaporins  Isotonic Solution  Hypertonic Solution  Plant Cells: Plasmolysis Hypotonic Solution  Plant Cells: Turgid  Animal Cells: Lyse Active Transport o Molecular Transport o Bulk Transport  Endocytosis  Exocytosis  - Section 7.4: Homeostasis and Cells - The Cell as an Organism o Homeostasis o Single-Celled Organisms (Unicellular) - Multicellular Life o Cellular Specialization  Animal Cells  Plant Cells o Levels of Organization  Cells  Tissues  Organs  Organ Systems  Organism UNIT 5: CELLULAR ENERGETICS CHAPTER 9: CELLULAR RESPIRATION Chemical Pathways - Glucose - Mitochondria Structure - “Cellular Respiration” - Chemical Equation for Cellular Respiration - Glycolysis o ATP Production o NADH Production  NAD+ converted to NADH - Fermentation o Anaerobic o Lactic Acid Fermentation The Krebs Cycle and Electron Transport - Aerobic - “The Krebs Cycle” o Pyruvic Acid (Pyruvate) o CO2 o NADH and FADH2 - - - The Electron Transport Chain o NADH and FADH2 o H+ Ions o ATP Synthesis The Totals o ATP o Efficiency of Cellular Respiration Energy and Exercise Comparing Photosynthesis and Cellular Respiration CHAPTER 8: PHOTOSYNTHESIS Energy and Life - Autotrophs - Heterotrophs - ATP (Adenosine Triphosphate) o ADP (Adenosine Diphosphate) o Stored Energy o Chemical Equation for ATP Synthesis Photosynthesis: An Overview - “Photosynthesis” - The Photosynthesis Equation - Pigments o Chlorophyll (a and b) The Reactions of Photosynthesis - Chloroplasts o Thylakoids o Grana o Photosystems o Stroma - Electron Carriers o NADP+ converted to NADPH - Light Dependent Reactions o H+ o NADPH o ATP Synthase - The Calvin Cycle o Carbon Fixation (CO2) o Sugar Production - Factors Affecting Photosynthesis UNIT 6: CELLULAR REPRODUCTION CHAPTER 12: DNA Identifying the Substances of Genes - The Role of DNA o o o Storing Genetic Information Copying Genetic Information Transmitting Genetic Information Structure of DNA o Nucleotides  Sugar (Deoxyribose)  Phosphate  Nitrogenous Bases  Purines o Adenine o Guanine  Pyrimidines o Thymine o Cytosine o Chargaff’s Rules o Rosalind Franklin o Watson and Crick o Double Helix Model  Antiparallel Strands  Hydrogen Bonding  Base Pairing CHAPTER 10: CELL GROWTH AND DIVISION Cell Growth, Division, and Reproduction - Limits to Cell Size o Exchanging Materials  Surface Area to Volume Ratio - Cell Division and Reproduction o Asexual Reproduction o Sexual Reproduction o Comparing Asexual and Sexual Reproduction The Process of Cell Division - Chromosomes o Prokaryotic Chromosomes o Eukaryotic Chromosomes  Chromatin - The Cell Cycle o The Prokaryotic Cell Cycle  Binary Fission o The Eukaryotic Cell Cycle  Interphase  G1 Phase  S Phase  G2 Phase  M Phase (Cell Division) o Mitosis  Prophase o  Centromere  Chromatid  Centrioles  Spindle  Metaphase  Anaphase  Telophase Cytokinesis  Animal: Cleavage Furrow  Plant: Cell Plate Regulating the Cell Cycle - Uncontrolled Cell Growth o Cancer  Tumor o Causes of Cancer o Treatments for Cancer CHAPTER 11: INTRODUCTION TO GENETICS Section 4: Meiosis - Chromosome Number o Diploid Cells (2n)  Homologous Chromosomes o Haploid Cells (n) - Phases of Meiosis - Gamete Formation - Zygote - Comparing Mitosis and Meiosis UNIT 7: GENETICS CHAPTER 11: INTRODUCTION TO GENETICS The Work of Gregor Mendel - Inheritance - Gregor Mendel o Garden Peas o Fertilization o True-Breeding o Cross-Pollination o Traits o Monohybrid Crosses o Mendel’s Seven Crosses o P, F1, F2 Generations o Hybrids o Genes o Alleles o o Mendel’s Two Conclusions  Biological Inheritance is Determined by Genes  Principle of Dominance  Dominant and Recessive Alleles Gametes Probability and Punnett Squares - Principle of Probability - Punnett Squares o Homozygous Dominant o Heterozygous o Homozygous Recessive o Phenotype vs. Genotype - Probability - Probabilities Predict Averages Exploring Mendelian Genetics - Dihybrid Crosses - Law of Independent Assortment